Search expression profiles by tissue

Obtain expression profiles for genes which are part of the EmbryoGENE microarray platform. Searches are performed against the EMBV3 annotation file, and may include a single term, which may be the probe ID, the gene symbol or a keyword. All probes whose annotation contain the keyword will be returned. Profiles for the selected tissue will be shown. For more details, see the help.

Microarray expression profile search: Granulosa Oocyte/Cumulus Blastocysts

Search time-course of early development

Obtain expression time-courses from the RNA-Seq libraries from Robert et al, 2016. Searches are performed against the full transcriptome annotation of the libraries, and may include a single term, which may be a gene symbol or a keyword. Absolute and relative combined expression profiles of all matching transcripts will be shown. For more details, see the help.

RNA-Seq time-course search:

Overview

This tool allows users to search and explore two types of gene expression profiles related to bovine development. The first are profiles of microarray expression data from a variety of tissues and conditions obtained from the ELMA database, which were collected by the researchers in the EmbryoGENE network.

The second type of expression profile is a RNA-Seq time-course of early bovine development, from germinal vesicle oocytes to late blastocysts:

Refer to the help section to learn how to use EmbryoGENE Profiler and to the methods section to learn about how the data was generated.

Citations

Please cite Khan et al, 2016 for use of EmbryoGENE Profiler and its plots. Cite the relevant publications if you refer to specific datasets within EmbryoGENE Profiler.